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We study how the three-dimensional shape of rigid filaments determines the microscopic dynamics and macroscopic rheology of entangled semidilute Brownian suspensions. To control the filament shape we use bacterial flagella, which are microns-long helical or straight filaments assembled from flagellin monomers. We compare the dynamics of straight rods, helical filaments, and shape-diblock copolymers composed of seamlessly joined straight and helical segments. Caged by their neighbors, straight rods preferentially diffuse along their long axis, but exhibit significantly suppressed rotational diffusion. Entangled helical filaments escape their confining tube by corkscrewing through the dense obstacles created by other filaments. By comparison, the adjoining segments of the rod-helix shape-diblocks suppress both the translation and the corkscrewing dynamics. Consequently, the shape-diblock filaments become permanently jammed at exceedingly low densities. We also measure the rheological properties of semidilute suspensions and relate their mechanical properties to the microscopic dynamics of constituent filaments. In particular, rheology shows that an entangled suspension of shape rod-helix copolymers forms a low-density glass whose elastic modulus can be estimated by accounting for how shear deformations reduce the entropic degrees of freedom of constrained filaments. Our results demonstrate that the three-dimensional shape of rigid filaments can be used to design rheological properties of semidilute fibrous suspensions. 

Both entangled and unentangled polymer melts exhibit stress overshoots when subject to shearing flow. The size of the overshoot depends on the applied shear rate and is related to relaxation mechanisms such as reptation, chain stretch, and convective constraint release. Previous experimental work shows that melts subjected to interrupted shear flows exhibit a smaller overshoot when sheared after partial relaxation. This has been shown to be consistent with predictions by constitutive models. Here, we report molecular dynamics simulations of interrupted shear of polymer melts where the shear flow after the relaxation stage is orthogonal to the originally applied flow. We observe that, for a given relaxation time, the size of the stress overshoot under orthogonal interrupted shear is larger than observed during parallel interrupted shear, which is not captured by constitutive models. Differences in maxima are also observed for overshoots in the first normal stress and chain end-to-end distance. We also show that measurements of the average number of entanglements per chain and average orientation at different scales along the chain are affected by the change in shear direction, leading to nonmonotonic relaxation of the off-diagonal components of orientation and an appearance of a “double peak” in the average number of entanglements during the transient. We propose that such complex behavior of entanglements is responsible for the increase in the overshoots of stress components and that models of the dynamics of entanglements might be improved upon by considering a tensorial measurement of entanglements that can be coupled to orientation.